Publications list


Updated 19 May 2019

2019C Rogers, D Gray Jr, N Bogdanowicz…Coherent Control of Two-Dimensional Excitons
2019D Soh, E Chatterjee, C Rogers, D Gray…Optical Selection Rules and Optical Nonlinearities of Excitonic States in Monolayer MoS2
2019H MabuchiCoherent Feedback Control in Quantum Circuits and Networks
2019E Ng, T Onodera, R Yanagimoto, H MabuchiCoherent frequency transfer of optical nonlinearities by feedback control of a non-degenerate optical parametric oscillator
2019D Soh, R Yamagimoto, E Chatterjee…Nonlinear optical response of a local surface plasmon coupled to a 2D material
2019R Hamerly, T Inagaki, P McMahon, D Venturelli…Benchmarking coherent Ising machines and quantum annealers with MAX-CUT and SK problems
2019E Chatterjee, D Soh, C Rogers, DJ Gray…Low-Temperature Annihilation Rate for Quasi-Localized Excitons in Monolayer MoS2
2019T Onodera, E Ng, P McMahon, A Marandi…Non-Gaussian quantum phenonema in synchronously-pumped optical parametric oscillator
2019C Rogers, D Gray, N Bogdanowicz, H MabuchiLaser annealing for Large Excitonic Reflectivity from MoSe2 grown by Chemical Vapor Deposition
2019SR Johnston, E Ng, SW Fong, WY Mok…Scanning microwave imaging of optically patterned Ge2Sb2Te5
2019R Yanagimoto, P McMahon, T Onodera, E Ng…Entangled-pulse generation inside coherent Ising machines using entanglement swapping
2019BH Berrie, A Bogana, SR Brady, J Dancoff…Scientific Delirium Madness 5.0: Gallery
2018DBS Soh, C Rogers, DJ Gray, E Chatterjee, H MabuchiOptical nonlinearities of excitons in monolayer
2018C Rogers, D Gray, N Bogdanowicz, H MabuchiLaser annealing for radiatively broadened grown by chemical vapor deposition
2018R Hamerly, T Inagaki, PL McMahon…Scaling advantages of all-to-all connectivity in physical annealers: the Coherent Ising Machine vs. D-Wave 2000Q
2018R Hamerly, T Inagaki, PL McMahon, D Venturelli…Experimental investigation of performance differences between Coherent Ising Machines and a quantum annealer
2018T Onodera, E Ng, N Lörch, A Yamamura…Nonlinear Quantum Behavior of Ultrashort-Pulse Optical Parametric Oscillators
2018C Limouse, JC Bell, CJ Fuller, AF Straight, H MabuchiMeasurement of Mesoscale Conformational Dynamics of Freely Diffusing Molecules with Tracking FCS
2018G Tabak, R Hamerly, H MabuchiFactorization of Linear Quantum Systems with Delayed Feedback
2018J Wu, H MabuchiMechanism of stochastic switching in single-atom absorptive bistability
2018C Rogers, H MabuchiResonant Photo-Luminescence Excitation Spectroscopy Experiments and Homogenous vs. Inhomogenous Broadening in MoSe2 Monolayers
2018T Onodera, E Ng, N Tezak, H Sanghera…Hybrid model reduction techniques for semiclassical dynamics with strong quantum features
2018J Wu, MA Armen, H MabuchiSelf-oscillation in the Maxwell–Bloch equations
2018R Yanagimoto, T Onodera, E Ng…Adiabatic Fock state generation scheme using Kerr nonlinearity
2018P McMahon, A Marandi, R Hamerly, E Ng…Progress on coherent Ising machines constructed from optical parametric oscillators
2018E Ng, T Onodera, P McMahon, A Marandi…Coherent quantum effects in networks of degenerate optical parametric oscillators
2017N Bisaria, M Greenfeld, C Limouse…Quantitative tests of a reconstitution model for RNA folding thermodynamics and kinetics
2017N Tezak, NH Amini, H MabuchiLow-dimensional manifolds for exact representation of open quantum systems
2017S Bonilla, C Limouse, N Bisaria, M Gebala…Single-Molecule Fluorescence Reveals Commonalities and Distinctions among Natural and in Vitro-Selected RNA Tertiary Motifs in a Multistep Folding Pathway
2017C Limouse, JC Bell, CJ Fuller, AF Straight, H MabuchiIntramolecular dynamics of single molecules in free diffusion
2017P McMahon, A Marandi, Y Haribara, R Hamerly…Combinatorial optimization using networks of optical parametric oscillators
2017E Ng, T Onodera, H MabuchiNonlinear coherent feedback control of a non-degenerate optical parametric oscillator
2017N Tezak, N Amini, H MabuchiLow-dimensional Manifolds for Efficient Representation of Open Quantum Systems
2017T Onodera, E Ng, H MabuchiA quantum network model for the coherent Ising machine
2016PL McMahon, A Marandi, Y Haribara, R Hamerly…A fully programmable 100-spin coherent Ising machine with all-to-all connections
2016G Tabak, H MabuchiTrapped modes in linear quantum stochastic networks with delays
2016R Hamerly, K Inaba, T Inagaki, H Takesue…Topological defect formation in 1D and 2D spin chains realized by network of optical parametric oscillators
2016DBS Soh, R Hamerly, H MabuchiComprehensive analysis of the optical Kerr coefficient of graphene
2016N Bisaria, M Greenfeld, C Limouse…Kinetic and thermodynamic framework for P4-P6 RNA reveals tertiary motif modularity and modulation of the folding preferred pathway
2016R Hamerly, A Marandi, M Jankowski, MM Fejer…Reduced models and design principles for half-harmonic generation in synchronously pumped optical parametric oscillators
2016DJ Gray Jr, TA Merz, Y Hikita, HY Hwang, H MabuchiOrientation-resolved domain mapping in tetragonal using polarized Raman spectroscopy
2016K Jacobs, N Tezak, H Mabuchi, R BaluAll-mechanical quantum noise cancellation for accelerometry: broadband with momentum measurements, narrow band without
2016R Hamerly, K Jamshidi, H MabuchiQuantum noise in energy-efficient slow light structures for optical computing: sqeezed light from slow light
2016H MabuchiApproximation of Quantum Stochastic Differential Equations for Input-Output Model Reduction
2016R Hamerly, A Marandi, M Jankowski…Reduced models for pulse shaping and nonlinear dynamics in optical parametric oscillators
2015PP Cheung, C Limouse, H Mabuchi, SR PfefferProtein flexibility is required for vesicle tethering at the Golgi
2015R Hamerly, H MabuchiQuantum noise of free-carrier dispersion in semiconductor optical cavities
2015N Tezak, H MabuchiA coherent perceptron for all-optical learning
2015NH Amini, Z Miao, Y Pan…On the generalization of linear least mean squares estimation to quantum systems with non-commutative outputs
2015R Hamerly, H MabuchiOptical devices based on limit cycles and amplification in semiconductor optical cavities
2015M Greenfeld, JW van de Meent…Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data
2014C Santori, JS Pelc, RG Beausoleil, N Tezak…Quantum noise in large-scale coherent nonlinear photonic circuits
2014DS Pavlichin, H MabuchiPhotonic circuits for iterative decoding of a class of low-density parity-check codes
2014DS Pavlichin, H MabuchiOptical modular arithmetic
2014C Santori, JS Pelc, RG Beausoleil…Quantum noise in large-scale photonic circuits
2014H MabuchiFundamental Principles of Coherent-Feedback Quantum Control
2013O Crisafulli, N Tezak, DBS Soh, MA Armen…Squeezed light in an optical parametric oscillator network with coherent feedback quantum control
2013R Hamerly, H MabuchiCoherent controllers for optical-feedback cooling of quantum oscillators
2013YD Kwon, MA Armen, H MabuchiFemtojoule-scale all-optical latching and modulation via cavity nonlinear optics
2013J Wang, H Mabuchi, XL QiCalculation of divergent photon absorption in ultrathin films of a topological insulator
2013G Sarma, R Hamerly, N Tezak…Transformation of quantum photonic circuit models by term rewriting
2013G Sarma, H MabuchiGauge subsystems, separability and robustness in autonomous quantum memories
2013DBS Soh, N Tezak, O Crisafulli, M Armen, H MabuchiOptical parametric oscillator network with coherent feedback quantum control.
2012R Hamerly, H MabuchiAdvantages of coherent feedback for cooling quantum oscillators
2012M Greenfeld, DS Pavlichin, H Mabuchi, D HerschlagSingle Molecule Analysis Research Tool (SMART): an integrated approach for analyzing single molecule data
2012N Tezak, A Niederberger…Specification of photonic circuits using quantum hardware description language
2012H MabuchiQubit limit of cavity nonlinear optics
2012H MabuchiCoherent-feedback control in nanophotonic circuits
2012H MabuchiNanophotonic Sensor Integration and Coherent Feedback
2012H MabuchiCoherent-feedback Quantum Control with Cold Atomic Spins
2011H MabuchiCoherent-feedback control strategy to suppress spontaneous switching in ultralow power optical bistability
2011J Kerckhoff, DS Pavlichin, H Chalabi…Design of nanophotonic circuits for autonomous subsystem quantum error correction
2011J Kerckhoff, MA Armen, H MabuchiRemnants of semiclassical bistability in the few-photon regime of cavity QED
2011H MabuchiNonlinear interferometry approach to photonic sequential logic
2011J Kerckhoff, MA Armen, DS Pavlichin…The dressed atom as binary phase modulator: towards attojoule/edge optical phase-shift keying
2011J Kerckhoff, MA Armen, DS Pavlichin…Optical ‘bistability’with single atom absorbers
2011C Limouse, C Fuller, K Zhang…Single-molecule fluorescence experiments with real-time feedback: Tracking-FCS, tracking-FRET and tracking diffusometry
2010J Kerckhoff, HI Nurdin, DS Pavlichin, H MabuchiDesigning quantum memories with embedded control: photonic circuits for autonomous quantum error correction
2010K McHale, H MabuchiIntramolecular fluorescence correlation spectroscopy in a feedback tracking microscope
2010J Kerckhoff, HI Nurdin, DS Pavlichin…Coherent-feedback formulation of continuous quantum error correction protocols
2010H MabuchiFunctionalizing Ultra-Low Energy Nonlinear Optics: Analysis and Suppression of Quantum Fluctuations
2010J Kerckhoff, MA Armen, H MabuchiQuantum remnants of absorptive bistability in the attojoule regime
2010CBM Limouse, CJ Fuller, AF Straight, H MabuchiExploring chromatin biochemistry with single-molecule fluorescence diffusometry
2009J Kerckhoff, L Bouten, A Silberfarb, H MabuchiPhysical model of continuous two-qubit parity measurement in a cavity-QED network
2009H MabuchiCavity-QED models of switches for attojoule-scale nanophotonic logic
2009MA Armen, AE Miller, H MabuchiSpontaneous dressed-state polarization in the strong driving regime of cavity QED
2009H MabuchiContinuous quantum error correction as classical hybrid control
2009K McHale, H MabuchiPrecise characterization of the conformation fluctuations of freely diffusing DNA: beyond Rouse and Zimm
2009AEB Nielsen, AS Hopkins, H MabuchiQuantum filter reduction for measurement-feedback control via unsupervised manifold learning
2009K McHale, A Berglund, K Zhang, C Limouse…Tracking Fluorescence Correlation Spectroscopy of Individual Biomolecules
2009K McHale, H MabuchiSupporting information for “Intramolecular Fluorescence Correlation Spectroscopy in a Feedback Tracking Microscope”
2009J Kerckhoff, H MabuchiVan der Waals enhancement of optical atom potentials via resonant coupling to surface polaritons
2008H MabuchiCoherent-feedback quantum control with a dynamic compensator
2008G Sarma, A Silberfarb, H MabuchiQuantum stochastic calculus approach to modeling double-pass atom-field coupling
2008H MabuchiDerivation of Maxwell-Bloch-type equations by projection of quantum models
2008JM Geremia, JK Stockton, H MabuchiErratum: Suppression of spin projection noise in broadband atomic magnetometry [phys. rev. lett. 94, 203002 (2005)]
2008JM Geremia, JK Stockton, H MabuchiRetraction
2008G Sarma, A Silberfarb, H MabuchiQuantum optics, physics of lasers, nonlinear optics, classical optics-Quantum stochastic calculus approach to modeling double-pass atom-field coupling
2008JM Geremia, JK Stockton…Suppression of spin projection noise in broadband atomic magnetometry (vol 94, art no 203002, 2005)
2008A Miller, A Silberfarb, O Crisafulli, H MabuchiQuantum Metrology with Cold Atomic Ensembles
2007K McHale, AJ Berglund, H MabuchiQuantum dot photon statistics measured by three-dimensional particle tracking
2007AJ Berglund, K McHale, H MabuchiFeedback localization of freely diffusing fluorescent particles near the optical shot-noise limit
2007AJ Berglund, K McHale, H MabuchiFluctuations in closed-loop fluorescent particle tracking
2007L Bouten, J Stockton, G Sarma, H MabuchiScattering of polarized laser light by an atomic gas in free space: A quantum stochastic differential equation approach
2007L Bouten, R van Handel, A Miller…Quantum measurement and feedback control
2007R van Handel, JK Stockton, H Mabuchi…Quantum State Preparation of Spin Ensembles by Continuous Measurement and Feedback
2007L Bouten, J Stockton, G Sarma…PART A-Fundamental concepts-Scattering of polarized laser light by an atomic gas in free space: A quantum stochastic differential equation approach
2007H MabuchiFrontiers in quantum feedback control
2007A Miller, J Stockton, M Hsu, O Crisafulli…Quantum Parameter Estimation With Cold Atomic Spins
2006PE Barclay, K Srinivasan, O Painter, B Lev…Integration of fiber-coupled high- microdisks with atom chips
2006JM Geremia, JK Stockton, H MabuchiTensor polarizability and dispersive quantum measurement of multilevel atoms
2006MA Armen, H MabuchiLow-lying bifurcations in cavity quantum electrodynamics
2006DA Steck, K Jacobs, H Mabuchi, S Habib…Feedback cooling of atomic motion in cavity QED
2006T McGarvey, A Conjusteau, H MabuchiFinesse and sensitivity gain in cavity-enhanced absorption spectroscopy of biomolecules in solution
2006AJ Berglund, H MabuchiPerformance bounds on single-particle tracking by fluorescence modulation
2006CW Lau, VA Vilnrotter, S Dolinar…Binary quantum receiver concept demonstration
2006H MabuchiA Caltech MURI Center for Quantum Networks
2006H Mabuchi, JJ Stockton, R van Handel, AE MillerQuantum Measurement and Feedback with Atomic Hyperfine Spins
2006A Berglund, H MabuchiTracking-FCS: Correlation Spectroscopy of Individual Particles
2006H MabuchiMabuchi, Hideo (1998-04-29) Continuous observation of quantum dynamics
2006H MabuchiControl and Dynamic Approach to Robust Quantum Computing
2006B Lev, P Barclay, J Kerckhoff, O Painter…Cavity QED with atom chips and micro-resonators
2006PE Barclay, K Srinivasan, M Borselli…Hybrid integration of fiber pigtailed silicon nitride microcavities with atom-chips for cavity QED applications
2005H Mabuchi, N KhanejaPrinciples and applications of control in quantum systems
2005R van Handel, JK Stockton…Modelling and feedback control design for quantum state preparation
2005AJ Berglund, H MabuchiTracking-FCS: Fluorescence correlation spectroscopy of individual particles
2005JM Geremia, JK Stockton, H MabuchiSuppression of spin projection noise in broadband atomic magnetometry
2005R Van Handel, H MabuchiQuantum projection filter for a highly nonlinear model in cavity QED
2005R van Handel, H MabuchiOptimal error tracking via quantum coding and continuous syndrome measurement
2005J Geremia, JK Stockton, H MabuchiContinuous quantum measurement and conditional spin-squeezing in alkali atoms
2005H MabuchiQuantum Measurement and Feedback Control
2005H MabuchiMeasurement and control in quantum information science
2005J Doyle, J Carlson, C Cassandras, PR Kumar…Plenary Panel Discussion: Challenges and opportunities for the future of control
2004JM Geremia, JK Stockton, H MabuchiReal-time quantum feedback control of atomic spin-squeezing
2004R Van Handel, JK Stockton, H MabuchiFeedback control of quantum state reduction
2004JK Stockton, R van Handel, H MabuchiDeterministic Dicke-state preparation with continuous measurement and control
2004DA Steck, K Jacobs, H Mabuchi, T Bhattacharya…Quantum feedback control of atomic motion in an optical cavity
2004JK Stockton, JM Geremia, AC Doherty, H MabuchiRobust quantum parameter estimation: Coherent magnetometry with feedback
2004B Lev, K Srinivasan, P Barclay, O Painter…Feasibility of detecting single atoms using photonic bandgap cavities
2004AJ Berglund, H MabuchiFeedback controller design for tracking a single fluorescent molecule
2004SJ van Enk, HJ Kimble, H MabuchiQuantum information processing in cavity-QED
2004K McHale, AJ Berglund, H MabuchiBayesian estimation for species identification in single-molecule fluorescence microscopy
2004A Hopkins, B Lev, H MabuchiProposed magnetoelectrostatic ring trap for neutral atoms
2004RM Murray, S Waydo, LB Cremean…A new approach to teaching feedback
2004H MabuchiQuantum feedback and the quantum–classical transition
2004R Murray, SS Waydo, AH EE, H MabuchiCDS 101-Analysis and Design of Feedback Systems CDS 110-Introduction to Control Theory Fall 2004
2004H Mabuchi, JM GeremiaQuantum feedback control with cold atomic spins
2004H MabuchiQuantum measurement and feedback with atomic spins
2004RMMSW Lars, BCH MabuchiAppealing to a Non-traditional Audience: A New Approach to Teaching Feedback
2003JK Stockton, JM Geremia, AC Doherty, H MabuchiCharacterizing the entanglement of symmetric many-particle spin- systems
2003JM Geremia, JK Stockton, AC Doherty, H MabuchiQuantum Kalman filtering and the Heisenberg limit in atomic magnetometry
2003B Lev, Y Lassailly, C Lee, A Scherer…Atom mirror etched from a hard drive
2003JM Geremia, JK Stockton, H MabuchiClosed-loop quantum parameter estimation: Spins in a magnetic field
2003A Zwierlein, CA Stan, CH Schunck, SMF Raupach…YVO_ {3} AU Peter Horsch, Giniyat Khaliullin, and Andrzej M. Oles PP 257203
2003H MabuchiQuantum optics and quantum information science
2002MA Armen, JK Au, JK Stockton, AC Doherty…Adaptive homodyne measurement of optical phase
2002J Vuckovic, M Loncar, H Mabuchi…Optimization of the Q factor in photonic crystal microcavities
2002 S. Habib, K. Jacobs, and H. Mabuchi Quantum Feedback Control
2002AJ Berglund, AC Doherty, H MabuchiPhoton statistics and dynamics of fluorescence resonance energy transfer
2002B Rahn, AC Doherty, H MabuchiExact performance of concatenated quantum codes
2002S Habib, K Jacobs, H Mabuchi, R Ryne, K Shizume…Quantum-classical transition in nonlinear dynamical systems
2002JM Geremia, J Williams, H MabuchiInverse-problem approach to designing photonic crystals for cavity QED experiments
2002J Stockton, M Armen, H MabuchiProgrammable logic devices in experimental quantum optics
2002S Habib, K Jacobs, H MabuchiQuantum feedback control
2002A Scherer, J Vuckovic, M Longcar…Photonic crystal microcavities for strong coupling between an atom and the cavity field and method of fabricating the same
2002H MabuchiThe Quantum-Classical Transition on Trial
2002H MabuchiExperiments in real-time quantum feedback
2002J Vuckovic, T Yoshie, M Loncar…Nano-scale optical and quantum optical devices based on photonic crystals
2002J Doyle, H MabuchiA new physics
2002AJ Berglund, AC Doherty…Interdisciplinary Physics: Biological Physics, Quantum Information, etc.-Photon Statistics and Dynamics of Fluorescence Resonance Energy Transfer
2002A Berglund, A Doherty, H MabuchiPhoton correlation spectroscopy of Fluorescence Resonance Energy Transfer
2002JM Geremia, J Williams…PART 2-Classical physics, including nonlinear media and photonic materials-Inverse-problem approach to designing photonic crystals for cavity QED …
2002J Vuckovic, M Loncar…PART 2-REGULAR ARTICLES-Classical physics, including nonlinear media and photonic materials-Design of photonic crystal microcavities for cavity …
2002J Vuckovic, M Loncar, T Yoshie…High-Q optical nanocavities in planar photonic crystals
2001J Vučković, M Lončar, H Mabuchi, A SchererDesign of photonic crystal microcavities for cavity QED
2001H Mabuchi, M Armen, B Lev…Quantum networks based on cavity QED.
2001B Rahn, AC Doherty, H MabuchiExact and approximate performance of concatenated quantum codes
2001H Mabuchi, J Au, J kee Chin, A Doherty…Quantum feedback and adaptive measurements
2000AC Doherty, S Habib, K Jacobs, H Mabuchi, SM TanQuantum feedback control and classical control theory
2000A Doherty, J Doyle, H Mabuchi…Robust control in the quantum domain
2000J Vuckovic, M Loncar, H Mabuchi…Photonic crystal microcavities for strong coupling between an atom and the cavity field
2000H MabuchiCavity Quantum Electrodynamics
1999H Mabuchi, J Ye, HJ KimbleFull observation of single-atom dynamics in cavity QED
1999J Ye, CJ Hood, T Lynn, H Mabuchi…Quantum manipulation and measurement of single atoms in optical cavity QED
1999J Ye, CJ Hood, T Lynn, H Mabuchi…Measurement and control of single atom motions in the quantum regime
1999H MabuchiContinuous observation of quantum dynamics.
1998DP DiVincenzo, CA Fuchs, H Mabuchi…Entanglement of assistance
1998H MabuchiStandard quantum limits for broadband position measurement
1998HJ Briege, JI Cirac, W Dür, SJ van Enk…Physical implementations for quantum communication in quantum networks
1998CJ Hood, TW Lynn, H Mabuchi…Quantum information processing with Cavity QED
1997JI Cirac, P Zoller, HJ Kimble, H MabuchiQuantum state transfer and entanglement distribution among distant nodes in a quantum network
1996H MabuchiDynamical identification of open quantum systems
1994H Mabuchi, ES Poizik, HJ KimbleBlue-light-induced infrared absorption in KNbO3