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Tag Archives: Single-molecule bio

SMART – Analyzing single molecule data

Max Greenfeld, Dmitri S. Pavlichin, Hideo Mabuchi and Daniel Herschlag, “Single Molecule Analysis Research Tool (SMART): An Integrated Approach for Analyzing Single Molecule Data,” PLoS ONE 7(2): e30024. doi:10.1371/journal.pone.0030024…

March 1, 2012 in Group publications.

Intramolecular FCS in a feedback tracking microscope

Kevin McHale and Hideo Mabuchi, “Intramolecular fluorescence correlation spectroscopy in a feedback tracking microscope,” Biophys. J. 99, 313-322, (2010).  arXiv:0908.1177
online…

October 7, 2010 in Group publications.

Precise characterization of conformation fluctuations of DNA

Kevin McHale and Hideo Mabuchi, “Precise characterization of the conformation fluctuations of freely diffusing DNA: beyond Rouse and Zimm,” J. Am. Chem. Soc. 131, 17901-17907, (2009); e-print (no subscription required).  online  additional info…

October 7, 2010 in Group publications.

Quantum dot photon statistics by particle tracking

Kevin McHale, Andrew J. Berglund and Hideo Mabuchi, “Quantum dot photon statistics measured by three-dimensional particle tracking,” Nano Letters 7, 3535-3539, (2007); e-print (no subscription needed); featured in the Jan. 2008 issue of Photonics Spectra.  online…

October 6, 2010 in Group publications.

Fluctuations in closed-loop particle tracking

Andrew J. Berglund, Kevin McHale, and Hideo Mabuchi, “Fluctuations in closed-loop fluorescent particle tracking,” Opt. Express 15, 7752-7773, (2007).  PDF  online…

October 6, 2010 in Group publications.

Cavity-enhanced spectroscopy of biomolecules in solution

Tim McGarvey, Andre Conjusteau and Hideo Mabuchi, “Finesse and sensitivity gain in cavity-enhanced absorption spectroscopy of biomolecules in solution,” Optics Express 14, 10441-10451, (2006).  PDF  online…

October 6, 2010 in Group publications.

Feedback localization near the shot-noise limit

Andrew J. Berglund, Kevin McHale and Hideo Mabuchi, “Feedback localization of freely diffusing fluorescent particles near the optical shot-noise limit,” Opt. Lett. 32, 145-147, (2007).  PDF  online…

October 6, 2010 in Group publications.

Kevin McHale’s Ph.D. thesis

Kevin L. McHale, “Feedback tracking and correlation spectroscopy of fluorescent nanoparticles and biomolecules.” Ph.D. thesis, defended 1/8/08.  online…

October 6, 2010 in Group theses.

Performance bounds on single-particle tracking

Andrew J. Berglund and Hideo Mabuchi, “Performance bounds on single-particle tracking by fluorescence modulation,” Appl. Phys. B 83, 127-133, (2006).  PDF  online…

October 6, 2010 in Group publications.

Tracking-FCS

Andrew J. Berglund and Hideo Mabuchi, “Tracking-FCS: Fluorescence correlation spectroscopy of individual particles,” Opt. Express 13, 8069-8082, (2005).  PDF  online…

October 6, 2010 in Group publications.

Nonexponential statistics of photobleaching

Andrew J. Berglund, “Nonexponential statistics of fluorescence photobleaching,” J. Chem. Phys. 121, 2899, (2004).  PDF  online…

October 6, 2010 in Group publications.

Andrew Berglund’s Ph.D. thesis

Andrew J. Berglund, “Feedback Control of Brownian Motion for Single-Particle Fluorescence Spectroscopy.” Ph.D. thesis, defended 9/27/06.  online…

October 6, 2010 in Group theses.

Bayesian estimation for single-molecule identification

Kevin McHale, Andrew J. Berglund, and Hideo Mabuchi, “Bayesian estimation for species identification in single-molecule fluorescence microscopy,” Biophys. J. 86, 3409, (2004).  PDF  online…

October 6, 2010 in Group publications.

Feedback controller design for tracking

Andrew J. Berglund and Hideo Mabuchi, “Feedback controller design for tracking a single fluorescent molecule,” Appl. Phys. B 78, 653, (2004).  PDF  online…

October 6, 2010 in Group publications.

Photon statistics and dynamics of FRET

A. J. Berglund, A. C. Doherty, and H. Mabuchi, “Photon statistics and dynamics of Fluorescence Resonance Energy Transfer,” Phys. Rev. Lett. 89, 068101, (2002).  PDF  cond-mat/0206031  online…

October 6, 2010 in Group publications.

Publications tag cloud

Cavity QED (25) coherent feedback (3) Experimental (24) Microtraps (7) Model reduction (13) Numerical (41) optical switching (2) Photonics (15) Quantum/classical (4) Quantum control (44) Quantum information (14) Quantum nonlinear dynamics (13) Quantum parameter estimation (5) Quantum trajectories (31) Single-molecule bio (15) Squeezed Light (1) Theoretical (79) ultra-low energy (4)

Publication categories

  • Group publications (71)
  • Group theses (8)
  • Primers (4)
  • Publications from collaborations (17)
  • Reviews (2)

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